两种体色三疣梭子蟹亲缘关系的PCR-SSCP分析     

迟大利  高焕  沈颂东  阎斌伦 《海洋通报(英文版)》2010,12(1):79-88

三疣梭子蟹作为重要的海洋经济动物，其常见体色为茶绿色。近年来在我国东部沿海海域海捕三疣梭子蟹中开始出现体色为紫色的一类梭子蟹，除体色不同外，二者表型特征并无显著差异。为确定两种体色三疣梭子蟹之间的关系，本文对两种体色三疣梭子蟹不同个体的线粒体COl和16srRNA基因进行了比较分析以判定体色的差异是否由于种属的差异引起的。通过对以上两个基因部分序列的SSCP和相关序列测定分析，发现在紫色和茶绿色群体中这两个线粒体保守序列基因的SSCP电泳条带图谱相似，序列分析表明COl和16srRNA基因在两种体色三疣梭子蟹群体中的核苷酸序列相似度分别为99．81％和99．91％。以上结果表明，紫色三疣梭子蟹并未发生亚种的分化，即紫色和茶绿色群体属于同一个种。此外，紫色梭子蟹群体的线粒体DNA序列在进化关系上较茶绿色群体更为保守。  相似文献   

两种体色三疣梭子蟹线粒体DNA 部分片段序列的比较分析     

迟大利  高焕  沈颂东  阎斌伦 《海洋科学》2010,34(11):27-34

三疣梭子蟹(Portunus trituberculatus)作为重要的海洋经济动物,其常见体色(头胸甲)为茶绿色。近年来在我国沿海海域海捕三疣梭子蟹中开始出现体色为紫色的一类梭子蟹,除体色不同外,二者表型特征并无显著差异。对两种体色三疣梭子蟹不同个体的线粒体COI和16S rRNA基因进行了序列比对分析以判定二者之间的亲缘关系。结果发现COI和16S rRNA基因在两种体色三疣梭子蟹群体中的核苷酸序列一致性分别为99.87%和99.88%,表明紫色三疣梭子蟹并未发生亚种的分化,即紫色和茶绿色群体属于同一个种。并利用GenBank数据库检索了梭子蟹科其他15种海产蟹的16S rRNA序列,进行了序列同源性比对分析和分子系统学方面的探讨,为梭子蟹种属分类学研究提供分子依据。  相似文献   

Evidence of the restricted gene flow within a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis     

Shotaro Hirase  Manami Kanno  Minoru Ikeda  Akihiro Kijima 《Marine Ecology》2012,33(4):481-489

Elucidating the scale of gene flow among populations is an important challenge for understanding the ecological dynamics and local adaptation of marine organisms. We assessed whether gene flow is restricted even at a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis, using highly polymorphic DNA markers, involving the mitochondrial DNA (mtDNA) control region and 15 microsatellite DNA (msDNA), because past ecological studies have suggested low dispersal ability for rocky intertidal fishes. We found significant heterogeneities between four neighboring local populations by both mtDNA and msDNA analyses. In addition, no genetic heterogeneity was detected by either method across generations within a population; it was considered that such genetic differentiation is retained across generations and that the gene flow of this species is restricted to within a radius of a few kilometers. This is the first report showing a clear genetic subdivision in rocky intertidal fish.  相似文献   

7个海星动物线粒体基因组比较及基因变异位点分析   总被引：3，自引：0，他引：3  

田美  申欣  孟学平  程汉良 《台湾海峡》2012,31(2):189-194

与单基因相比,线粒体基因组是一个完整的体系,具有信息量丰富等优点,在过去的十几年间被广泛地应用于后生动物关键类群的分子系统发育和群体遗传学的研究.本论文综合分析了海星纲7个物种(多棘海盘车、赭色豆海星、多棘槭海星、砂海星、长棘海星、棘冠海星和海燕)线粒体基因组全序列,全面揭示了海星纲线粒体基因组的基本特征.海星线粒体基因组均编码后生动物线粒体基因组标准的37个基因.7个海星线粒体基因组的基因排列完全一致;与海胆纲及海参纲楯手目线粒体基因组的基因排列相比,海星线粒体基因组的基因排列存在4.6 kb长片段的倒位.长棘海星属13个线粒体蛋白质编码基因的非同义替换率(Ka)与同义替换率(Ks)比值都低于1.000 0(为0.006 0～0.221 9),显示出较强的负(纯化)选择.对海星纲线粒体基因组的基因变异位点分析结果表明,nad5、nad4基因可作为备选的分子标记,应用于海星纲群体遗传学的研究中.同时,在长棘海星属线粒体基因组变异位点分析中,nad5、nad4基因仍然可作为备选的分子标记,用于分析长棘海星不同群体及物种之间的生物多样性,为合理利用其生物资源及其生物多样性的保护提供基础资料.  相似文献   

基于16S rRNA 部分序列探讨部分鳚亚目鱼类的分子系统进化关系   总被引：1，自引：0，他引：1  

张源真  王伟  姜志强  张钊 《海洋科学》2012,36(9):89-95

通过PCR扩增获得了3科5属6种中国黄渤海海域的鳚亚目(Blennioidei)鱼类的线粒体16S rRNA基因序列片段约669bp碱基,结合来自 GenBank的5种鳚亚目其他科鱼类的相应基因片段,并以眼斑雪冰鱼(Chionodraco rastrospinosus)为外群,生成供系统发育分析的序列矩阵,利用MEGA 4.0软件分析序列的碱基组成、差异百分比、转换/颠换值等,应用最大简约法(MP)和邻接法(NJ)构建系统发育树.结果显示:在鳚亚目鱼类的16S rRNA 片段生成的序列矩阵中发现有碱基的插入缺失现象,共有207 bp变异位点,转换/颠换值为0.8,碱基平均差异为3.36;支持绵鳚(Enchelyopus elongates)归于鳚亚目绵鳚科(Zoarcidae),鳚(Azuma emmnion)归于鳚亚目线鳚科(Stichaeidae);方氏云鳚(Enedrias fangi)和云鳚(Enedrias nebulosus)种间遗传距离只有0.01,亲缘关系最近.  相似文献   

波纹唇鱼mtDNA D-loop 序列变异分析   总被引：2，自引：1，他引：1  

胡静  齐兴柱  尹绍武  骆剑  朱晓平  祝斐  胡亚丽 《海洋科学》2012,36(4):50-56

为研究波纹唇鱼(Cheilinus undulatus)线粒体D-loop 序列遗传多样性, 作者采用聚合酶链式反应和克隆技术对海波纹唇鱼群体(n=25)的mtDNA D-loop 序列进行克隆和测序, 获得长度大约为1 400 bp的产物。用ClustalX 软件进行排序比较, 将结果导入MEGA5.0, 结果显示出在这25 尾个体中, 共检测出66 个变异位点, 包括0 个碱基缺失, 4 个碱基插入, 59 转换位点, 2 颠换位点及1 个转换和颠换同时存在的位点。并用MEGA5.0 软件构建该群25 尾个体的NJ 和UPGMA 系统树。由DNASP 软件计算出该波纹唇鱼群体的多态位点数(S)为62, 核苷酸多样性(P_i)为0.00606, 平均核苷酸差异数为6.907。结果表明波纹唇鱼群体的mtDNA-loop 基因个体差异程度不明显。  相似文献   

8种石首鱼类线粒体基因组特征及分子系统进化分析     

孙利元  杨天燕  孟玮  杨宝清  张涛 《海洋科学》2017,41(3):48-54

为探讨石首鱼科(Sciaenidae)鱼类分子系统进化关系,采用生物信息学方法分析了黑鳃梅童鱼(Collichthys niveatus)、棘头梅童鱼(C.lucidus)、大黄鱼(Larimichthys crocea)、小黄鱼(L.polyactis)、鮸鱼(Miichthys miiuy)、白姑鱼(Pennahia argentata)、黄姑鱼(Nibea albiflora)和皮氏叫姑鱼(Johnius belangerii)共8种石首鱼类线粒体基因组全序列的基本特征。结果显示,除皮氏叫姑鱼外,其余7种石首鱼类编码的37个基因排列顺序与脊椎动物线粒体基因组相同。基因组碱基分布存在不均衡现象,A+T含量高于G+C含量。线粒体基因组的基因变异位点分析结果表明,ND4和ND5基因可作为COI基因的辅助分子标记,应用于石首鱼类群体遗传学的研究中。黄鱼亚科5种鱼类13个蛋白质编码基因的Ka/Ks比值远低于1,显示出较强的纯化选择。皮氏叫姑鱼与其他石首鱼间的遗传距离均较大且亲缘关系较远,暗示叫姑鱼属或为石首鱼类中较为原始的类群。基于线粒体基因组全序列构建NJ系统树支持黄鱼亚科和白姑鱼亚科亲缘关系较近的形态学结论。而基于去除控制区后序列和13个蛋白质编码基因序列构建的系统树则表明两亚科鱼类间的差别在非编码区更为明显。  相似文献   

基于COI序列的翡翠股贻贝Perna viridis线粒体遗传特性分析及其近缘种间的系统关系探讨   总被引：1，自引：0，他引：1  

位正鹏  孔晓瑜  吴相云  喻子牛 《热带海洋学报》2009,28(6):72-78

应用通用引物 COIL 1490和 COIH 2198对翡翠股贻贝Perna viridis的性腺和体细胞线粒体DNA进行PCR扩增，获得661bp长度的COI基因片段，经过比对性腺与体细胞的COI片段，发现雄性性腺与体细胞COI基因均为一个单倍型，即体内只有一种线粒体DNA类型，没有发现双单性遗传现象，雌、雄性腺的COI基因片段变异率很低（0.31%）。应用PAUP构建了NJ树、MP树以及贝叶斯法构建了贝叶斯树，对股贻贝属3种间的系统关系进行了分析，结果表明，翡翠股贻贝P. viridis与P. canaliculus 和 P. perna 之间的分化与分歧年代的估算是相吻合的。  相似文献   

Molecular ecological study of <Emphasis Type="Italic">Siganus spinus</Emphasis> and <Emphasis Type="Italic">S. guttatus</Emphasis> from Okinawan waters based on mitochondrial DNA control region sequences     

Kensuke Iwamoto  Akihiro Takemura  Tetsuo Yoshino  Hideyuki Imai 《Journal of Oceanography》2009,65(1):103-112

The mitochondrial DNA (mtDNA) control region was sequenced to examine the genetic variability and gene flow of juvenile Siganus spinus and S. guttatus. In total, 461 nucleotide sequences were obtained from 69 specimens of juvenile S. spinus from Okinawa Island and Ishigaki Island, in which 17 variable sites and 22 haplotypes were identified. Haplotype diversity (h) was high (0.9244 in Okinawa and 0.8984 in Ishigaki), whereas nucleotide diversity (π) was low (0.0063 in Okinawa and 0.0059 in Ishigaki). The two populations were not genetically distinct. Siganus guttatus, which do not form large schools at recruitment, in contrast S. spinus, were also analyzed by studying 152 individuals collected off Okinawa Island, Miyako Island, and Ishigaki Island. Of 476 nucleotide sequences, 50 were variable, and 42 haplotypes were identified. Genetic variability values were high (h = 0.8766 and π = 0.0151 in Okinawa; h = 0.9640 and π = 0.0192 in Miyako; h = 0.9161 and π = 0.0199 in Ishigaki). The Okinawa population was genetically isolated from the Miyako and Ishigaki populations. As a result, genetic diversity was high for each of these siganid populations despite their being target species for fisheries; however, the degree of inter-population gene flow was higher for S. spinus than S. guttatus, suggesting that these species exhibit different dispersal strategies.  相似文献   

Comparative Analysis of Mitochondrial Control Region Sequence from Three Flatfish Species （Pleuronectidae）     

YUJianzhong KONGXiaoyu YUZiniu ZHOULishi 《中国海洋大学学报(英文版)》2005,4(1):80-84

The 5‘-end of the mitochondrial control region sequences of three flatfishes (Pleuronectiformes: Pleuronectidae) were amplified and sequenced. These sequences were compared with those of other three Pleuronectids species retrieved from GenBank. A phylogenetic tree was constructed based on the partial control region sequences. The results of phylogenetic analysis are consistent with those of conventional systematics. Compared to previous studies, the structure of the 5‘-end of mitochondrial control region was analyzed. The terminal associated sequence motif and its complementary motif were identified at the 5‘-end of the sequences. A conserved sequence block, named as CM5‘ d, was identified in the 5‘-end of control region sequences in all Pleuronectids. Another central conserved sequence block, named as CSB-F, was detected in the central conserved blocks.  相似文献